EE Holmes Open Notebook

I am very slowly converting my open notebook on blogger to GitHub blog and markdown. For now, it is still all on blogger: Parsimonious Pursuits

• Notes on computing the Fisher Information matrix for MARSS models. Part IV Recursion in Harvey 1989
• Notes on computing the Fisher Information matrix for MARSS models. Part III Overview of Harvey 1989
• Notes on computing the Fisher Information matrix for MARSS models. Part II Louis 1982
• Notes on computing the Fisher Information matrix for MARSS models. Part I Background
• Analysis of PhD and Baccalaureate origin of math faculty (Part I)
• Another way to get R package download stats
• More general formulation. Tests 2
• More general formulation of the MARSS model
• Quantifying R package downloads using the CRAN mirror stats
• Automating testing of package version updates (MARSS specific)
• More native R versus RcppArmadillo speed test comparisons for EM algorithm
• Speed comparisons using native R and RcppArmadillo
• Speeding up R (MARSS specific)
• Speed test using Matrix to do block summation
• Fitting big state-space models with glmnet?
• Dixon and Coles tests repeated with glmnet(..., lambda=0)
• Follow-up on the glmnet problems I had for fitting poisson models
• glm, speedglm, glmnet comparison (part 1 repeated with lambda=0)
• Dixon and Coles 2-player model with glmnet: Tests with simulated real data
• Dixon and Coles 2-player model fit with glmnet: Test 1 with real data
• Dixon and Coles' 2-player model in glm, speedglm and glmnet
• Multiplayer problem revisited with glm vs speedglm vs glmnet
• Getting coefficients out of glmnet
• glm, speedglm, glmnet comparison (Part 4: models with a few categorical variables but many levels)
• glm, speedglm, glmnet comparison (Part 3: models with many categorical explanatory variables)
• Writing a model matrix in sparse matrix form
• glm, speedglm versus glmnet comparison tests (part 1)
• Test with real data
• Test of the 2-player filter model with attack and defend
• Sept 23 2013 Papers
• update equations for the 2-player contest with a poisson link function
• Toy example of a filter for computing the 2-player hidden x's
• Relationship of Elo algorithm to logistic regression
• Strategy for asynchronous update algorithm for Dixon and Cole's model
• Does biological complexity add realism?
• neutral models of metapopulation dynamics
• Rweb
• prediction error
• predictive vs interpolative accuracy
• ok so LR depends on nested-ness